Kingdom
Pseudomonadati
Phylum
Planctomycetota
Class
Planctomycetia
Order
Planctomycetales
Family
Planctomycetaceae
Genus
Planctopirus
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Planctomycetota |
| Class | Planctomycetia |
| Order | Planctomycetales |
| Family | Planctomycetaceae |
| Genus | Planctopirus |
| Species | Planctopirus limnophila |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Cocci |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Aquatic |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Planctopirus limnophila DSM 3776
Accession NumberNC_014149.1
Gene Summary
Adenine Count
8422 bp
Thymine Count
7481 bp
Guanine Count
10628 bp
Cytosine Count
10479 bp
Genome Length
37010 bp
Protein-coding Genes
48 genes
Non-Coding Genes
8 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| gh3 auxin-responsive promoter family protein | PLIM_RS08685 | Not Available | + | 2171833 - 2173512 | 63520.2 |
| dihydrodipicolinate synthase family protein | PLIM_RS08690 | Not Available | + | 2173711 - 2174727 | 37309.6 |
| dj-1/pfpi family protein | PLIM_RS08695 | Not Available | + | 2174855 - 2175421 | 21493.9 |
| valine--pyruvate transaminase | PLIM_RS08700 | P09053 | - | 2175535 - 2176815 | 46840.7 |
| sigma-54-dependent fis family transcriptional regulator | PLIM_RS08705 | Q06065 | + | 2177384 - 2178403 | 37811.5 |
| c-terminal binding protein | PLIM_RS08710 | O27051 | - | 2178458 - 2179405 | 34002.2 |
| duf481 domain-containing protein | PLIM_RS08715 | Not Available | + | 2180018 - 2181277 | 46744.0 |
| sugar phosphate isomerase/epimerase | PLIM_RS08720 | Not Available | + | 2181456 - 2182319 | 31415.4 |
| scpa family protein | PLIM_RS08725 | A7Z671 | + | 2182509 - 2183282 | 29370.9 |
| duf4870 domain-containing protein | PLIM_RS08730 | Not Available | + | 2183390 - 2183839 | 16726.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.