Kingdom
Pseudomonadati
Phylum
Planctomycetota
Class
Planctomycetia
Order
Planctomycetales
Family
Planctomycetaceae
Genus
Planctopirus
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Planctomycetota |
| Class | Planctomycetia |
| Order | Planctomycetales |
| Family | Planctomycetaceae |
| Genus | Planctopirus |
| Species | Planctopirus limnophila |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Cocci |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Aquatic |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Planctopirus limnophila DSM 3776
Accession NumberNC_014149.1
Gene Summary
Adenine Count
8422 bp
Thymine Count
7481 bp
Guanine Count
10628 bp
Cytosine Count
10479 bp
Genome Length
37010 bp
Protein-coding Genes
48 genes
Non-Coding Genes
8 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| uma2 family endonuclease | PLIM_RS00515 | Not Available | - | 134295 - 134879 | 21561.9 |
| abc transporter permease | PLIM_RS00520 | Not Available | - | 134994 - 138575 | 128140.0 |
| tigr03364 family fad-dependent oxidoreductase | PLIM_RS00525 | Not Available | + | 138889 - 140169 | 46804.1 |
| holliday junction resolvase ruvx | PLIM_RS22140 | Q1GI16 | - | 140546 - 141145 | 22200.2 |
| lps-assembly protein lptd | PLIM_RS00535 | Not Available | + | 141491 - 144562 | 113429.0 |
| diacylglycerol kinase | PLIM_RS00540 | Not Available | + | 144590 - 145213 | 22710.7 |
| type iia dna topoisomerase subunit b | PLIM_RS00545 | Not Available | - | 145484 - 147391 | 70582.5 |
| dna topoisomerase (atp-hydrolyzing) subunit a | PLIM_RS00550 | Q9PKK4 | - | 147516 - 149861 | 87859.2 |
| hypothetical protein | PLIM_RS00555 | Not Available | + | 150271 - 150915 | 23391.2 |
| hypothetical protein | PLIM_RS00560 | Not Available | + | 151065 - 151781 | 25776.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.