Planctopirus limnophila DSM 3776

Gram-negativeCocciMotileAerobe

Kingdom

Pseudomonadati

Phylum

Planctomycetota

Class

Planctomycetia

Order

Planctomycetales

Family

Planctomycetaceae

Genus

Planctopirus

Description

Planctopirus limnophila DSM 3776 is a Gram-negative, nonsporulating coccus that thrives in aquatic environments and exhibits aerobic metabolism. This microbe's spherical shape is characteristic of many cocci, contributing to its identification within its ecological niche. As an aerobe, Planctopirus limnophila requires oxygen for survival and growth, indicating its adaptation to oxygen-rich habitats typically found in freshwater systems. The presence of this organism in aquatic ecosystems suggests it may play a role in biogeochemical cycles, potentially influencing nutrient availability and microbial community dynamics. Given its specific habitat and metabolic requirements, Planctopirus limnophila may interact closely with other microorganisms in its environment, possibly contributing to processes such as organic matter decomposition or nutrient cycling. Understanding the ecological roles of microbes like Planctopirus limnophila is crucial for comprehending the complexities of aquatic ecosystems and their responses to environmental changes.

Taxonomy

KingdomPseudomonadati
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPlanctomycetales
FamilyPlanctomycetaceae
GenusPlanctopirus
SpeciesPlanctopirus limnophila
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Planctopirus limnophila DSM 3776
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Planctopirus limnophila DSM 3776

Accession NumberNC_014149.1

Gene Summary

Adenine Count

8422 bp

Thymine Count

7481 bp

Guanine Count

10628 bp

Cytosine Count

10479 bp

Genome Length

37010 bp

Protein-coding Genes

48 genes

Non-Coding Genes

8 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
sdr family oxidoreductasePLIM_RS08140P0A2D0+2022674 - 202341725981.2
duf4291 family proteinPLIM_RS08145Not Available+2023477 - 202411824386.0
udp-n-acetylmuramoyl-l-alanine--d-glutamate ligasePLIM_RS08150A7NI97+2024150 - 202564654216.8
holo-acp synthasePLIM_RS08155Q1IHY2-2025612 - 202600714797.2
hypothetical proteinPLIM_RS08160Not Available-2026117 - 202678525469.1
a24 family peptidasePLIM_RS22675P72640-2026798 - 202797342746.9
hd-gyp domain-containing proteinPLIM_RS22680Q9WY30-2028101 - 202978663005.5
hypothetical proteinPLIM_RS08175Not Available-2030307 - 203117332795.3
sdr family nad(p)-dependent oxidoreductasePLIM_RS08180Q9L9F8+2031375 - 203216328464.0
iron-containing alcohol dehydrogenase family proteinPLIM_RS08185A8ABP9+2032212 - 203325837806.7

Displaying genes 1571 – 1580 of 4126 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites