Tsukamurella paurometabola DSM 20162

Gram-positiveRodNon-motileObligate aerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Tsukamurellaceae

Genus

Tsukamurella

Description

Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040) is an aerobic, weakly acid-fast, pleomorphic, Gram-positive bacterium isolated from mycetomes and ovaries of bed bugs (Cimex lectularius) and also found in soil and sludge. It is a member of the nocardioform actinomycetes and is closely related to the genus Mycobacterium. This organism has been isolated from cases of systemic infection, usually in association with other diseases. Cases of human infection with T. paurometabola are infrequent, nevertheless diagnosis rates are increasing, typically in patients with underlying predisposing factors including immunosupression, chronic pathology and indwelling foreign bodies. Thus it is a novel pathogen causing catheter-related bacteremia in patients with cancer. (Adapted from: http://www.ncbi.nlm.nih.gov/sites/genomeprj?Db=genomeprj&cmd=ShowDetailView&TermToSearch=29399 and PMID: 1571430). (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyTsukamurellaceae
GenusTsukamurella
SpeciesTsukamurella paurometabola
StrainDSM 20162

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Tsukamurella paurometabola DSM 20162
Ecology, Host, and Life Cycle
Oxygen requirementsObligate aerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementPairs
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityYes

Genome Summary

Tsukamurella paurometabola DSM 20162

Accession NumberNC_014158.1

Gene Summary

Adenine Count

690645 bp

Thymine Count

692841 bp

Guanine Count

1501496 bp

Cytosine Count

1494936 bp

Genome Length

4379918 bp

Protein-coding Genes

4211 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
orotidine-5'-phosphate decarboxylaseTPAU_RS12910Not Available-2676898 - 267770426870.9
carbamoyl-phosphate synthase large subunitTPAU_RS12915Not Available-2677707 - 2681036118495.0
glutamine-hydrolyzing carbamoyl-phosphate synthase small subunitTPAU_RS12920Not Available-2681036 - 268217240793.0
hypothetical proteinTPAU_RS12925Not Available-2682173 - 268266417998.8
dihydroorotaseTPAU_RS12930Not Available-2682661 - 268397445846.5
aspartate carbamoyltransferase catalytic subunitTPAU_RS12935Not Available-2684030 - 268498633840.8
bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase pyrrTPAU_RS12940Not Available-2684983 - 268556120666.8
fad-dependent oxidoreductaseTPAU_RS12945Not Available+2685663 - 268763969195.0
bile acid:sodium symporter family proteinTPAU_RS12950Not Available-2687636 - 268860432984.6
transcription antitermination factor nusbTPAU_RS12955Not Available-2688654 - 268915117774.0

Displaying genes 2611 – 2620 of 4368 in total

Pathways

808 pathways
2,3-Dihydroxybenzoate Biosynthesis pathway thumbnail
2,3-Dihydroxybenzoate Biosynthesis
2,3-Dihydroxybenzoate Biosynthesis
Biosynthesis of Siderophore Group Nonribosomal Peptides pathway thumbnail
Biosynthesis of Siderophore Group Nonribosomal Peptides
Biosynthesis of Siderophore Group Nonribosomal Peptides
Lysine Biosynthesis pathway thumbnail
Lysine Biosynthesis
Lysine Biosynthesis
Taurine Metabolism pathway thumbnail
Taurine Metabolism
Taurine Metabolism
Glycolysis and Pyruvate Dehydrogenase pathway thumbnail
Glycolysis and Pyruvate Dehydrogenase
Glycolysis and Pyruvate Dehydrogenase
Arginine Metabolism pathway thumbnail
Arginine Metabolism
Arginine Metabolism
Ornithine Metabolism pathway thumbnail
Ornithine Metabolism
Ornithine Metabolism
Proline Metabolism pathway thumbnail
Proline Metabolism
Proline Metabolism
Show All 808 Pathways

Metabolites

8 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00024581D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranosideC14H25NO11Chemical structure of 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranosideNot available
Average383.35Da
Monoisotopic383.142760629Da
BASm00037771D-myo-inositol 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranosideC15H29N2O11SChemical structure of 1D-myo-inositol 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranosideNot available
Average445.46Da
Monoisotopic445.1486574Da
BASm00037801D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside 3-phosphateC14H24NO14PChemical structure of 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside 3-phosphateNot available
Average461.314Da
Monoisotopic461.094538615Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0016682MirubactinC26H32N6O11Chemical structure of MirubactinNULL
Average604.573Da
Monoisotopic604.212905874Da
BASm0016750X-14847C12H23NO10Chemical structure of X-14847NULL
Average341.313Da
Monoisotopic341.132195945Da
BASm0017265Uridine diphosphate-N-acetylglucosamineC17H27N3O17P2Chemical structure of Uridine diphosphate-N-acetylglucosamine528-04-1
Average607.3537Da
Monoisotopic607.081569477Da

Displaying 1–8 of 8 metabolites