Tsukamurella paurometabola DSM 20162

Gram-positiveRodNon-motileObligate aerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Tsukamurellaceae

Genus

Tsukamurella

Description

Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040) is an aerobic, weakly acid-fast, pleomorphic, Gram-positive bacterium isolated from mycetomes and ovaries of bed bugs (Cimex lectularius) and also found in soil and sludge. It is a member of the nocardioform actinomycetes and is closely related to the genus Mycobacterium. This organism has been isolated from cases of systemic infection, usually in association with other diseases. Cases of human infection with T. paurometabola are infrequent, nevertheless diagnosis rates are increasing, typically in patients with underlying predisposing factors including immunosupression, chronic pathology and indwelling foreign bodies. Thus it is a novel pathogen causing catheter-related bacteremia in patients with cancer. (Adapted from: http://www.ncbi.nlm.nih.gov/sites/genomeprj?Db=genomeprj&cmd=ShowDetailView&TermToSearch=29399 and PMID: 1571430). (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyTsukamurellaceae
GenusTsukamurella
SpeciesTsukamurella paurometabola
StrainDSM 20162

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Tsukamurella paurometabola DSM 20162
Ecology, Host, and Life Cycle
Oxygen requirementsObligate aerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementPairs
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityYes

Genome Summary

Tsukamurella paurometabola DSM 20162

Accession NumberNC_014158.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4211 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
cysteine dioxygenaseTPAU_RS22790Not Available-243221 - 24441341206.3
cysteine dioxygenaseTPAU_RS23355Not Available+244484 - 24475310747.3
polymorphic toxin type 15 domain-containing proteinTPAU_RS22150Not Available+246048 - 24879893950.0
gad-like domain-containing proteinTPAU_RS01180Not Available+248791 - 24942623396.5
gad-like domain-containing proteinTPAU_RS01185Not Available+249520 - 25015523343.5
hypothetical proteinTPAU_RS22795Not Available+250205 - 25048910417.0
type ii toxin-antitoxin system phd/yefm family antitoxinTPAU_RS01190Not Available+251269 - 2515449538.1
type ii toxin-antitoxin system rele family toxinTPAU_RS01195Not Available+251541 - 25183411090.3
histone-like nucleoid-structuring protein lsr2TPAU_RS01200Not Available+252079 - 25241412076.1
hypothetical proteinTPAU_RS01205Not Available+252710 - 2529438448.09

Displaying genes 251 – 260 of 4368 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

8 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00024581D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranosideC14H25NO11Chemical structure of 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranosideNot available
Average383.35Da
Monoisotopic383.142760629Da
BASm00037771D-myo-inositol 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranosideC15H29N2O11SChemical structure of 1D-myo-inositol 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranosideNot available
Average445.46Da
Monoisotopic445.1486574Da
BASm00037801D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside 3-phosphateC14H24NO14PChemical structure of 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside 3-phosphateNot available
Average461.314Da
Monoisotopic461.094538615Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0016682MirubactinC26H32N6O11Chemical structure of MirubactinNULL
Average604.573Da
Monoisotopic604.212905874Da
BASm0016750X-14847C12H23NO10Chemical structure of X-14847NULL
Average341.313Da
Monoisotopic341.132195945Da
BASm0017265Uridine diphosphate-N-acetylglucosamineC17H27N3O17P2Chemical structure of Uridine diphosphate-N-acetylglucosamine528-04-1
Average607.3537Da
Monoisotopic607.081569477Da

Displaying 1–8 of 8 metabolites