Rhodothermus marinus DSM 4252

Gram-negativeRodNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Rhodothermota

Class

Rhodothermia

Order

Rhodothermales

Family

Rhodothermaceae

Genus

Rhodothermus

Description

Rhodothermus marinus is a thermohalophilic bacterium and is the only validly described species in the genus Rhodothermus. It is aerobic, chemoorganotrophic, has been isolated from marine habitats and grows from 54 to 77 degrees Celsius with optimal growth at 65 degrees Celsius. It grows best in 2% NaCl although growth can occur from 0.5% NaCl to over 6% NaCl. Thus it is therefore both thermophilic and slightly but strictly halophilic and can only grow in a very narrow zone in the submarine hot springs, close to their openings, determined by temperature and salt concentration as well as of content of O2 and organic material.Strain DSM 4252 (the type strain) was isolated in 1988 at 2-3m depth (at low tide) from a submarine hot spring at Reykjanes, Isafjardardjup Bay, off the south-west coast of Iceland (adapted from PMID 16075163 and J.Gen.Microbiol 134:299). Cells are 0.5 um in diameter and 2-2.5 um long, without flagella, non-spore forming and without lipid granules, although they form a slime capsule when grown in rich-media (adapted from 10.4056.sigs46736). (HAMAP: RHOM4)

Taxonomy

KingdomPseudomonadati
PhylumRhodothermota
ClassRhodothermia
OrderRhodothermales
FamilyRhodothermaceae
GenusRhodothermus
SpeciesRhodothermus marinus
StrainDSM 4252

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Rhodothermus marinus DSM 4252
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature65
Temperature rangeThermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy source Heterotroph
PathogenicityNo

Genome Summary

Rhodothermus marinus DSM 4252

Accession NumberNC_013501.1

Gene Summary

Adenine Count

580530 bp

Thymine Count

576129 bp

Guanine Count

1048147 bp

Cytosine Count

1056798 bp

Genome Length

3261604 bp

Protein-coding Genes

2818 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaRMAR_RS00010A6GYW8+165 - 167657918.3
dna polymerase iii subunit betaRMAR_RS00015Not Available+1734 - 287341820.3
hypothetical proteinRMAR_RS00020Not Available-2875 - 392439453.2
rna polymerase sigma factorRMAR_RS00025Not Available-4029 - 466124695.0
50s ribosomal protein l13RMAR_RS00030Q2S6I8+4892 - 533516704.5
30s ribosomal protein s9RMAR_RS00035Q03EE9+5356 - 575715220.5
30s ribosomal protein s2RMAR_RS00040Q2S6J0+5858 - 675733565.2
translation elongation factor tsRMAR_RS00045Q2S6J1+6790 - 762030558.7
ump kinaseRMAR_RS00050Q2S6J2+7752 - 853728903.2
ribosome recycling factorRMAR_RS00055Q2S6J3+8572 - 914121565.1

Displaying genes 1 – 10 of 2974 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

226 records
Metabolite IDMetabolite nameStructureCAS number
BASm0010887(4R,5S)-dethiobiotinC10H18N2O3Chemical structure of (4R,5S)-dethiobiotin533-48-2
Average214.2615Da
Monoisotopic214.1317425Da
BASm0011145(3Z,5E)-dodecadienoyl-CoAC33H50N7O17P3SChemical structure of (3Z,5E)-dodecadienoyl-CoANot available
Average941.78Da
Monoisotopic941.221869666Da
BASm0011146(3Z,5E)-dodecadienoateC12H19O2Chemical structure of (3Z,5E)-dodecadienoateNot available
Average195.283Da
Monoisotopic195.139053432Da
BASm00111563-hydroxydodecanoyl-CoAC33H54N7O18P3SChemical structure of 3-hydroxydodecanoyl-CoANot available
Average961.81Da
Monoisotopic961.248084414Da
BASm0012597(6R)-10-formyltetrahydrofolateC20H21N7O7Chemical structure of (6R)-10-formyltetrahydrofolateNot available
Average471.431Da
Monoisotopic471.151343204Da
BASm0017296Guanosine diphosphate mannoseC16H25N5O16P2Chemical structure of Guanosine diphosphate mannose3123-67-9
Average605.3411Da
Monoisotopic605.077152801Da

Displaying 221–226 of 226 metabolites