Butyrivibrio proteoclasticus B316

Gram-positiveRodNon-motileAnaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Lachnospirales

Family

Lachnospiraceae

Genus

Butyrivibrio

Description

Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316) is an anaerobic, polysaccharide-degrading, butyrate-forming rumen, Gram-positive bacterium isolated from the bovine rumen and with a key role in plant polysaccharide degradation. The 4.4Mb genome consists of 4 replicons; a chromosome, a chromid and two megaplasmids. The chromid is the smallest reported for all bacteria, and the first identified from the phylum Firmicutes. B. proteoclasticus devotes a large proportion of its genome to the breakdown and reassembly of complex polysaccharides and has a highly developed glycobiome when compared to other sequenced bacteria. The secretion of a range of polysaccharide-degrading enzymes which initiate the breakdown of pectin, starch and xylan, a subtilisin family protease active against plant proteins, and diverse intracellular enzymes to break down oligosaccharides constitute the degradative capability of this organism. A prominent feature of B. proteoclasticus is the presence of multiple gene clusters predicted to be involved in polysaccharide biosynthesis. Metabolic reconstruction reveals the absence of an identifiable gene for enolase, a conserved enzyme of the glycolytic pathway. This is the first report of an organism lacking an enolase. (Adapted from PMID: 20689770). (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderLachnospirales
FamilyLachnospiraceae
GenusButyrivibrio
SpeciesButyrivibrio proteoclasticus
StrainB316

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Butyrivibrio proteoclasticus B316
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Butyrivibrio proteoclasticus B316

Accession NumberNC_014390.1

Gene Summary

Adenine Count

59744 bp

Thymine Count

55585 bp

Guanine Count

35739 bp

Cytosine Count

35257 bp

Genome Length

186325 bp

Protein-coding Genes

163966 genes

Non-Coding Genes

22359 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
30s ribosomal protein s13BPR_RS03205C4ZBU3+768677 - 76904513894.0
30s ribosomal protein s11BPR_RS03210A9KJG8+769150 - 76955713913.7
30s ribosomal protein s4BPR_RS03215C4ZBU5+769867 - 77046022695.8
dna-directed rna polymerase subunit alphaBPR_RS03220A3DJK1+770649 - 77160835130.9
bl17 family ribosomal proteinBPR_RS03225C4Z2V8+771811 - 77234720328.4
m15 family metallopeptidaseBPR_RS03230Not Available-772450 - 77334332668.2
energy-coupling factor transporter atpaseBPR_RS03235A0PXX7+773522 - 77437932010.6
energy-coupling factor transporter atpaseBPR_RS03240Q8R7Y5+774395 - 77524631627.9
energy-coupling factor transporter transmembrane protein ecftBPR_RS03245A5N4S9+775240 - 77604330438.8
trna pseudouridine(38-40) synthase truaBPR_RS03250C0ZIL2+776123 - 77690228725.0

Displaying genes 841 – 850 of 3493 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

12 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da
BASm0002483ergosteryl 3-beta-D-glucosideC34H54O6Chemical structure of ergosteryl 3-beta-D-glucosideNot available
Average558.789Da
Monoisotopic558.39203946Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014045Propionic acidC3H6O2Chemical structure of Propionic acid79-09-4
Average74.0785Da
Monoisotopic74.036779436Da
BASm0014055Linoleic acidC18H32O2Chemical structure of Linoleic acid60-33-3
Average280.4455Da
Monoisotopic280.240230268Da
BASm0014057Isovaleric acidC5H10O2Chemical structure of Isovaleric acid503-74-2
Average102.1317Da
Monoisotopic102.068079564Da
BASm0014059Stearic acidC18H36O2Chemical structure of Stearic acid57-11-4
Average284.4772Da
Monoisotopic284.271530396Da
BASm0014062Valeric acidC5H10O2Chemical structure of Valeric acid109-52-4
Average102.1317Da
Monoisotopic102.068079564Da
BASm0014079FuranC4H4OChemical structure of Furan110-00-9
Average68.074Da
Monoisotopic68.02621475Da

Displaying 1–10 of 12 metabolites