Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| acetolactate synthase | N824_15995 | Not Available | - | 1127875 - 1129614 | 63378.1 |
| dihydroxy-acid dehydratase | N824_16000 | Not Available | - | 1129649 - 1131271 | 57248.3 |
| branched-chain amino acid aminotransferase | N824_16005 | Not Available | - | 1131397 - 1132287 | 33454.3 |
| atp synthase subunit epsilon | N824_16010 | Not Available | - | 1132908 - 1133150 | 8490.49 |
| f0f1 atp synthase subunit beta | N824_16015 | Not Available | - | 1133176 - 1134681 | 54228.0 |
| hypothetical protein | N824_16020 | Not Available | - | 1134766 - 1134930 | 6106.85 |
| dtdp-4-dehydrorhamnose reductase | N824_16025 | Not Available | + | 1134920 - 1135822 | 33430.0 |
| peroxiredoxin | N824_16030 | Not Available | + | 1135914 - 1136378 | 17101.3 |
| Trna-arg | Not Available | Not Available | + | 1136491 - 1136567 | Not Available |
| hypothetical protein | N824_16040 | Not Available | - | 1136922 - 1138565 | 63849.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.