Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 3-isopropylmalate dehydrogenase | N824_15945 | Not Available | - | 1116615 - 1117676 | 38566.3 |
| 2-isopropylmalate synthase | N824_15950 | Not Available | - | 1117749 - 1119266 | 56083.0 |
| 3-isopropylmalate dehydratase small subunit | N824_15955 | Not Available | - | 1119420 - 1120016 | 22402.6 |
| 3-isopropylmalate dehydratase large subunit | N824_15960 | Not Available | - | 1120036 - 1121442 | 50272.1 |
| 2-isopropylmalate synthase | N824_15965 | Not Available | - | 1121485 - 1122648 | 42509.8 |
| 3-isopropylmalate dehydrogenase | N824_15970 | Not Available | - | 1122660 - 1123751 | 39939.1 |
| molybdenum abc transporter atp-binding protein | N824_15975 | Not Available | - | 1123748 - 1125160 | 52753.9 |
| ketol-acid reductoisomerase | N824_15980 | Not Available | - | 1125227 - 1126708 | 54102.3 |
| hypothetical protein | N824_15985 | Not Available | - | 1126742 - 1127209 | 17695.1 |
| acetohydroxyacid synthase small subunit | N824_15990 | Not Available | - | 1127248 - 1127865 | 24013.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.