Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | N824_15745 | Not Available | + | 1073830 - 1074747 | 34650.3 |
| porphobilinogen deaminase | N824_15750 | Not Available | + | 1074772 - 1076352 | 58926.6 |
| delta-aminolevulinic acid dehydratase | N824_15755 | Not Available | + | 1076423 - 1077343 | 33142.6 |
| glutamate-1-semialdehyde 2,1-aminomutase | N824_15760 | Not Available | + | 1077345 - 1078718 | 49166.0 |
| histidine kinase | N824_15765 | Not Available | + | 1078855 - 1079622 | 28489.5 |
| transcriptional regulator | N824_15770 | Not Available | + | 1079625 - 1080329 | 27351.4 |
| hypothetical protein | N824_15775 | Not Available | + | 1080329 - 1080844 | 19624.8 |
| uroporphyrinogen decarboxylase | N824_15780 | Not Available | + | 1080861 - 1081883 | 38018.3 |
| hypothetical protein | N824_15785 | Not Available | + | 1081891 - 1082439 | 21253.8 |
| rna polymerase sigma-70 factor | N824_15790 | Not Available | + | 1082515 - 1083081 | 21515.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.