Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | N824_15545 | Not Available | + | 1027476 - 1028504 | 38557.3 |
| hypothetical protein | N824_15550 | Not Available | - | 1028639 - 1028857 | 7239.77 |
| hypothetical protein | N824_15555 | Not Available | - | 1028826 - 1029533 | 23517.9 |
| phosphonate abc transporter atp-binding protein | N824_15560 | Not Available | - | 1029543 - 1030295 | 28206.2 |
| hypothetical protein | N824_15565 | Not Available | - | 1030375 - 1031031 | 19005.2 |
| short-chain dehydrogenase | N824_15570 | Not Available | + | 1031192 - 1031881 | 24981.8 |
| hypothetical protein | N824_15575 | Not Available | + | 1031902 - 1032609 | 26487.5 |
| hypothetical protein | N824_15580 | Not Available | + | 1032611 - 1033543 | 34420.2 |
| hypothetical protein | N824_15585 | Not Available | + | 1033585 - 1034205 | 23392.6 |
| 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase | N824_15590 | Not Available | + | 1034254 - 1036245 | 73957.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.