Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | N824_14835 | Not Available | + | 842496 - 842951 | 17228.4 |
| coa-binding protein | N824_14840 | Not Available | + | 842955 - 843314 | 13173.8 |
| malate dehydrogenase | N824_14845 | Not Available | - | 844014 - 845096 | 38950.7 |
| hypothetical protein | N824_14850 | Not Available | - | 845105 - 846691 | 60539.5 |
| ribosomal protein s12 methylthiotransferase | N824_14855 | Not Available | - | 846738 - 848072 | 50426.3 |
| cell division protein ftsy | N824_14860 | Not Available | - | 848117 - 849079 | 34629.8 |
| hypothetical protein | N824_14865 | Not Available | - | 849152 - 849313 | 5767.06 |
| 50s ribosomal protein l33 | N824_14870 | Not Available | - | 849352 - 849534 | 6936.6 |
| 50s ribosomal protein l28 | N824_14875 | Not Available | - | 849575 - 849808 | 8918.04 |
| acetyl-coa synthetase | N824_14880 | Not Available | + | 850187 - 852079 | 70068.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.