Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| iron-sulfur binding protein | N824_14785 | Not Available | - | 833319 - 833672 | 12380.5 |
| hypothetical protein | N824_14790 | Not Available | + | 833852 - 834397 | 20531.9 |
| methylmalonyl-coa mutase | N824_14795 | Not Available | + | 834400 - 835947 | 57111.1 |
| chromosomal replication initiation protein | N824_14800 | Not Available | + | 836142 - 837572 | 53963.2 |
| dna repair protein mutt | N824_14805 | Not Available | - | 837650 - 838201 | 20974.0 |
| hypothetical protein | N824_14810 | Not Available | - | 838203 - 838601 | 15319.5 |
| hypothetical protein | N824_14815 | Not Available | - | 838607 - 839380 | 25896.2 |
| hypothetical protein | N824_14820 | Not Available | - | 839384 - 839827 | 15847.8 |
| lema family protein | N824_14825 | Not Available | - | 839911 - 840492 | 21235.5 |
| fad-dependent dehydrogenase | N824_14830 | Not Available | + | 840924 - 842465 | 56037.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.