Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | N824_14735 | Not Available | + | 822878 - 823777 | 33636.1 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | N824_14740 | Not Available | + | 823831 - 824679 | 32240.3 |
| ferrochelatase | N824_14745 | Not Available | + | 824742 - 825755 | 38275.0 |
| hypothetical protein | N824_14750 | Not Available | - | 825752 - 826966 | 45939.4 |
| udp-glucose 6-dehydrogenase | N824_14755 | Not Available | + | 827028 - 828338 | 48024.9 |
| epimerase | N824_14760 | Not Available | + | 828338 - 829327 | 37258.8 |
| udp-galactose-4-epimerase | N824_14765 | Not Available | + | 829333 - 830355 | 37199.1 |
| hypothetical protein | N824_14770 | Not Available | + | 830357 - 830923 | 21985.9 |
| dtdp-glucose 4,6-dehydratase | N824_14775 | Not Available | + | 830927 - 831979 | 39808.6 |
| abc transporter | N824_14780 | Not Available | - | 831994 - 833226 | 43100.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.