Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ap endonuclease | N824_14575 | Not Available | - | 787521 - 788579 | 39637.6 |
| oxidoreductase | N824_14580 | Not Available | - | 788588 - 789748 | 42265.9 |
| gmc family oxidoreductase | N824_14585 | Not Available | - | 789748 - 791451 | 63592.0 |
| twin-arginine translocation pathway signal protein | N824_14590 | Not Available | - | 791470 - 792141 | 24349.1 |
| hypothetical protein | N824_14595 | Not Available | - | 792263 - 792376 | 4224.12 |
| nad-dependent epimerase | N824_14600 | Not Available | + | 792408 - 793352 | 35502.3 |
| transcriptional regulator | N824_14605 | Not Available | + | 793407 - 794132 | 27175.0 |
| hypothetical protein | N824_14610 | Not Available | - | 794153 - 794938 | 29100.3 |
| beta-d-glucoside glucohydrolase | N824_14615 | Not Available | - | 795073 - 797340 | 83155.6 |
| hypothetical protein | N824_14620 | Not Available | - | 797379 - 798041 | 25494.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.