Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| aspartokinase | N824_14220 | Not Available | + | 706607 - 709054 | 89796.9 |
| homoserine kinase | N824_14225 | Not Available | + | 709051 - 709986 | 33313.8 |
| threonine synthase | N824_14230 | Not Available | + | 709999 - 711309 | 48686.1 |
| hypothetical protein | N824_14235 | Not Available | - | 711296 - 711730 | 15454.9 |
| 5,10-methylenetetrahydrofolate reductase | N824_14240 | Not Available | - | 711834 - 712787 | 35936.4 |
| methionine synthase | N824_14245 | Not Available | - | 712811 - 716470 | 135442.0 |
| hypothetical protein | N824_14250 | Not Available | - | 716983 - 717735 | 26974.6 |
| hypothetical protein | N824_14255 | Not Available | - | 717784 - 718353 | 22868.7 |
| n-acetylmuramic acid-6-phosphate etherase | N824_14260 | Not Available | - | 718360 - 719253 | 32411.3 |
| peptidase s41 | N824_14265 | Not Available | + | 719352 - 720929 | 58445.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.