Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 4-hydroxythreonine-4-phosphate dehydrogenase | N824_14170 | Not Available | - | 697108 - 698187 | 39121.9 |
| 16s rrna methyltransferase | N824_14175 | Not Available | + | 698289 - 699071 | 29565.9 |
| phosphoglycerate dehydrogenase | N824_14180 | Not Available | + | 699118 - 700044 | 34033.2 |
| hypothetical protein | N824_14185 | Not Available | - | 700039 - 701916 | 71278.5 |
| transcription elongation factor grea | N824_14190 | Not Available | + | 702108 - 702581 | 17181.6 |
| hit family hydrolase | N824_14195 | Not Available | + | 702593 - 702994 | 14550.9 |
| pyrophosphatase | N824_14200 | Not Available | - | 703046 - 703372 | 12336.8 |
| hypothetical protein | N824_14205 | Not Available | - | 703375 - 704904 | 58439.4 |
| d-tyrosyl-trna(tyr) deacylase | N824_14210 | Not Available | - | 704969 - 705421 | 16360.9 |
| gtpase rsga | N824_14215 | Not Available | - | 705427 - 706347 | 34090.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.