Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | N824_13965 | Not Available | + | 646626 - 647408 | 29111.2 |
| hypothetical protein | N824_13970 | Not Available | + | 647429 - 648709 | 44218.1 |
| hypothetical protein | N824_13975 | Not Available | + | 648768 - 649154 | 14176.8 |
| twin-arginine translocation protein, tata/e family subunit | N824_13980 | Not Available | + | 649165 - 649368 | 7236.06 |
| glutamyl-trna(gln) amidotransferase | N824_13985 | Not Available | + | 649403 - 650839 | 52181.1 |
| hypothetical protein | N824_13990 | Not Available | + | 650882 - 652093 | 46327.7 |
| malic enzyme | N824_13995 | Not Available | + | 652435 - 654546 | 77409.5 |
| holliday junction dna helicase ruva | N824_14000 | Not Available | + | 654550 - 655134 | 20537.1 |
| gliding motility protein | N824_14005 | Not Available | + | 655147 - 662361 | 270958.0 |
| hypothetical protein | N824_14010 | Not Available | + | 662463 - 663143 | 25984.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.