Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | N824_10170 | Not Available | + | 5947634 - 5948191 | 20386.2 |
| transporter | N824_10175 | Not Available | + | 5948205 - 5948618 | 15385.5 |
| peptidase t | N824_10180 | Not Available | - | 5948620 - 5949879 | 46000.6 |
| hypothetical protein | N824_10185 | Not Available | + | 5949941 - 5950588 | 23643.3 |
| peptidase m14 carboxypeptidase a | N824_10190 | Not Available | + | 5950649 - 5952349 | 65171.6 |
| rhomboid family protein | N824_10195 | Not Available | + | 5952352 - 5952969 | 23220.9 |
| hypothetical protein | N824_10200 | Not Available | - | 5952966 - 5953934 | 37384.6 |
| muconate cycloisomerase | N824_10205 | Not Available | + | 5954023 - 5955060 | 38269.5 |
| hypothetical protein | N824_10210 | Not Available | - | 5955050 - 5955235 | 7114.02 |
| nadh oxidase | N824_10215 | Not Available | - | 5955239 - 5955559 | 11884.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.