Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| single-stranded dna-binding protein | N824_09965 | Not Available | - | 5904525 - 5904953 | 15904.7 |
| adenine glycosylase | N824_09970 | Not Available | - | 5904968 - 5906017 | 40327.2 |
| dna-binding protein | N824_09975 | Not Available | + | 5906189 - 5906491 | 11089.5 |
| hypothetical protein | N824_09980 | Not Available | + | 5906499 - 5907359 | 30929.6 |
| ribonuclease g | N824_09985 | Not Available | + | 5907610 - 5909160 | 58650.4 |
| dna repair protein rada | N824_09990 | Not Available | + | 5909260 - 5910636 | 50429.1 |
| membrane protein | N824_09995 | Not Available | + | 5911081 - 5911638 | 20673.0 |
| hypothetical protein | N824_10000 | Not Available | + | 5911638 - 5912603 | 36231.6 |
| carbamoyl phosphate synthase large subunit | N824_10005 | Not Available | - | 5912644 - 5915460 | 104428.0 |
| hypothetical protein | N824_10010 | Not Available | - | 5915679 - 5915996 | 11057.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.