Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| membrane protein | N824_09915 | Not Available | + | 5896507 - 5896827 | 11070.2 |
| hypothetical protein | N824_09920 | Not Available | - | 5896906 - 5897370 | 17644.7 |
| hypothetical protein | N824_09925 | Not Available | - | 5897398 - 5897577 | 6872.61 |
| acyl-coa dehydrogenase | N824_09930 | Not Available | - | 5897666 - 5898805 | 41455.9 |
| aspartate decarboxylase | N824_09935 | Not Available | - | 5898904 - 5899254 | 12951.8 |
| pantoate--beta-alanine ligase | N824_09940 | Not Available | - | 5899300 - 5900139 | 31157.2 |
| hypothetical protein | N824_09945 | Not Available | - | 5900173 - 5900268 | 3655.49 |
| glycogen synthase | N824_09950 | Not Available | + | 5900287 - 5901117 | 31966.3 |
| hypothetical protein | N824_09955 | Not Available | + | 5901136 - 5902581 | 51543.3 |
| glutamine amidotransferase | N824_09960 | Not Available | + | 5902663 - 5904501 | 67765.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.