Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| succinate dehydrogenase | N824_09465 | Not Available | - | 5804997 - 5805767 | 27854.4 |
| succinate dehydrogenase | N824_09470 | Not Available | - | 5805791 - 5807770 | 73347.2 |
| succinate dehydrogenase | N824_09475 | Not Available | - | 5807795 - 5808475 | 25337.7 |
| hypothetical protein | N824_09480 | Not Available | - | 5808646 - 5808891 | 8246.98 |
| hypothetical protein | N824_09485 | Not Available | - | 5808860 - 5810170 | 44188.5 |
| diaminopimelate epimerase | N824_09490 | Not Available | + | 5810318 - 5811130 | 30270.6 |
| helicase | N824_09495 | Not Available | - | 5811135 - 5813429 | 86034.8 |
| hypothetical protein | N824_09500 | Not Available | + | 5813581 - 5816388 | 104777.0 |
| hypothetical protein | N824_09505 | Not Available | + | 5816429 - 5817172 | 27746.2 |
| transcriptional regulator | N824_09510 | Not Available | - | 5817169 - 5817864 | 26492.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.