Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | N824_09365 | Not Available | - | 5785840 - 5786319 | 17214.2 |
| octanoyltransferase | N824_09370 | Not Available | - | 5786401 - 5787096 | 26502.7 |
| 4'-phosphopantetheinyl transferase | N824_09375 | Not Available | - | 5787108 - 5787749 | 24455.5 |
| deoxycytidine triphosphate deaminase | N824_09380 | Not Available | + | 5787818 - 5788354 | 20106.3 |
| hypothetical protein | N824_09385 | Not Available | + | 5788402 - 5790717 | 84661.1 |
| hypothetical protein | N824_09390 | Not Available | + | 5790653 - 5791087 | 15409.3 |
| enoyl-coa hydratase | N824_09395 | Not Available | + | 5791094 - 5791855 | 28265.4 |
| short-chain dehydrogenase | N824_09400 | Not Available | + | 5791859 - 5792734 | 31356.8 |
| 3-oxoacyl-acp synthase | N824_09405 | Not Available | - | 5792747 - 5793793 | 38537.0 |
| atp-dependent clp protease adaptor protein clps | N824_09410 | Not Available | + | 5793874 - 5794155 | 10871.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.