Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | N824_09165 | Not Available | - | 5738609 - 5739061 | 17448.0 |
| preprotein translocase subunit seca | N824_09170 | Not Available | - | 5739130 - 5742444 | 124325.0 |
| hypothetical protein | N824_09175 | Not Available | - | 5742679 - 5742981 | 11486.7 |
| phosphoribosylamine--glycine ligase | N824_09180 | Not Available | + | 5743140 - 5744411 | 45491.6 |
| hypothetical protein | N824_09185 | Not Available | - | 5744653 - 5745399 | 27415.5 |
| hypothetical protein | N824_09190 | Not Available | - | 5745411 - 5745806 | 13105.9 |
| arginase | N824_09195 | Not Available | - | 5745915 - 5747096 | 44512.5 |
| hypothetical protein | N824_09200 | Not Available | + | 5747109 - 5748140 | 37725.0 |
| phosphoserine phosphatase | N824_09205 | Not Available | + | 5748142 - 5749440 | 49431.9 |
| tryptophan 2 3-dioxygenase | N824_09210 | Not Available | + | 5749442 - 5750407 | 37928.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.