Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | N824_08910 | Not Available | + | 5684422 - 5685741 | 48681.4 |
| hypothetical protein | N824_08915 | Not Available | - | 5685784 - 5687049 | 45668.5 |
| hypothetical protein | N824_08920 | Not Available | - | 5687066 - 5688952 | 70537.1 |
| cupin | N824_08925 | Not Available | + | 5689242 - 5690123 | 34407.4 |
| cupin | N824_08930 | Not Available | + | 5690276 - 5691157 | 33526.7 |
| von willebrand factor type a | N824_08935 | Not Available | + | 5691254 - 5692351 | 41541.6 |
| magnesium chelatase | N824_08940 | Not Available | + | 5692383 - 5693885 | 56853.1 |
| dna mismatch repair protein mutt | N824_08945 | Not Available | + | 5693907 - 5695184 | 48485.5 |
| hypothetical protein | N824_08950 | Not Available | + | 5695209 - 5696096 | 33887.2 |
| response regulator | N824_08955 | Not Available | - | 5696104 - 5696793 | 26557.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.