Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | N824_08840 | Not Available | + | 5673140 - 5675083 | 74103.7 |
| hypothetical protein | N824_08845 | Not Available | + | 5675073 - 5676269 | 45502.1 |
| hypothetical protein | N824_08850 | Not Available | + | 5676315 - 5676473 | 5970.88 |
| hypothetical protein | N824_08855 | Not Available | + | 5676601 - 5677758 | 43818.6 |
| hypothetical protein | N824_08860 | Not Available | - | 5677876 - 5678289 | 15210.6 |
| hypothetical protein | N824_08865 | Not Available | - | 5678282 - 5678614 | 13150.7 |
| hypothetical protein | N824_08870 | Not Available | - | 5678713 - 5678910 | 7672.32 |
| coproporphyrinogen iii oxidase | N824_08875 | Not Available | + | 5678941 - 5679993 | 39470.7 |
| short-chain dehydrogenase | N824_08880 | Not Available | + | 5679997 - 5680782 | 28563.6 |
| hypothetical protein | N824_08885 | Not Available | - | 5680910 - 5683738 | 107330.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.