Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| transmembrane rhomboid family protein | N824_07820 | Not Available | - | 5460556 - 5461281 | 27399.0 |
| dna mismatch repair protein mutl | N824_07825 | Not Available | - | 5461288 - 5463174 | 70110.7 |
| hypothetical protein | N824_07830 | Not Available | + | 5463366 - 5465183 | 67224.4 |
| hypothetical protein | N824_07835 | Not Available | + | 5465308 - 5465874 | 20952.6 |
| flavonol synthase | N824_07840 | Not Available | - | 5465961 - 5466923 | 36306.0 |
| peptide methionine sulfoxide reductase | N824_07845 | Not Available | + | 5467170 - 5467769 | 22249.5 |
| hypothetical protein | N824_07850 | Not Available | - | 5467759 - 5467884 | 4718.76 |
| hypothetical protein | N824_07855 | Not Available | - | 5467930 - 5468913 | 35052.0 |
| nitroreductase | N824_07860 | Not Available | + | 5469141 - 5469773 | 23401.9 |
| hypothetical protein | N824_07865 | Not Available | + | 5469970 - 5472690 | 100274.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.