Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dna repair protein recf | N824_07670 | Not Available | - | 5429235 - 5430338 | 42709.5 |
| hypothetical protein | N824_07675 | Not Available | + | 5430576 - 5431244 | 24733.4 |
| hypothetical protein | N824_07680 | Not Available | + | 5431338 - 5432906 | 61159.8 |
| 6,7-dimethyl-8-ribityllumazine synthase | N824_07685 | Not Available | + | 5432962 - 5433453 | 17228.6 |
| hypothetical protein | N824_07690 | Not Available | + | 5433671 - 5434003 | 12618.9 |
| lipoyl synthase | N824_07695 | Not Available | + | 5434260 - 5435138 | 32979.8 |
| rna polymerase sigma-70 factor | N824_07700 | Not Available | + | 5435204 - 5435755 | 20907.2 |
| hypothetical protein | N824_07705 | Not Available | + | 5435757 - 5436635 | 32078.0 |
| hypothetical protein | N824_07710 | Not Available | - | 5436641 - 5437576 | 33414.7 |
| excinuclease abc subunit a | N824_07715 | Not Available | - | 5437581 - 5440424 | 105780.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.