Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l4 | N824_07370 | Not Available | - | 5366273 - 5366902 | 23008.8 |
| 50s ribosomal protein l3 | N824_07375 | Not Available | - | 5366907 - 5367524 | 21922.4 |
| hypothetical protein | N824_07380 | Not Available | - | 5367705 - 5368097 | 14407.1 |
| permease | N824_07385 | Not Available | - | 5368094 - 5368930 | 28954.7 |
| hypothetical protein | N824_07390 | Not Available | + | 5369061 - 5369669 | 23122.1 |
| 30s ribosomal protein s10 | N824_07395 | Not Available | - | 5369753 - 5370058 | 11418.2 |
| elongation factor g | N824_07400 | Not Available | - | 5370118 - 5372232 | 77788.1 |
| 30s ribosomal protein s7 | N824_07405 | Not Available | - | 5372250 - 5372717 | 17575.5 |
| 30s ribosomal protein s12 | N824_07410 | Not Available | - | 5372734 - 5373147 | 15095.5 |
| hypothetical protein | N824_07415 | Not Available | - | 5373431 - 5373688 | 10169.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.