Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| atpase | N824_07220 | Not Available | + | 5346589 - 5348133 | 55980.5 |
| nucleotidyltransferase | N824_07225 | Not Available | + | 5348237 - 5349139 | 34014.3 |
| molecular chaperone dnak | N824_07230 | Not Available | - | 5349203 - 5351119 | 68621.2 |
| hypothetical protein | N824_07235 | Not Available | - | 5351284 - 5352474 | 44750.2 |
| 50s ribosomal protein l17 | N824_07240 | Not Available | - | 5352566 - 5353108 | 20160.1 |
| dna-directed rna polymerase subunit alpha | N824_07245 | Not Available | - | 5353201 - 5354193 | 37212.9 |
| 30s ribosomal protein s4 | N824_07250 | Not Available | - | 5354270 - 5354905 | 24049.9 |
| 30s ribosomal protein s11 | N824_07255 | Not Available | - | 5354944 - 5355333 | 13802.8 |
| 30s ribosomal protein s13 | N824_07260 | Not Available | - | 5355356 - 5355733 | 14059.2 |
| translation initiation factor if-1 | N824_07265 | Not Available | - | 5355935 - 5356153 | 8280.22 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.