Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | N824_07170 | Not Available | - | 5334869 - 5335930 | 40264.0 |
| 1-pyrroline-5-carboxylate dehydrogenase | N824_07175 | Not Available | + | 5336044 - 5337672 | 59993.8 |
| carbonic anhydrase | N824_07180 | Not Available | - | 5337749 - 5338420 | 24647.5 |
| membrane protein | N824_07185 | Not Available | - | 5338427 - 5340031 | 57531.7 |
| hypothetical protein | N824_07190 | Not Available | - | 5340108 - 5340446 | 12956.8 |
| porin | N824_07195 | Not Available | + | 5340646 - 5341881 | 46231.3 |
| methylmalonyl-coa carboxyltransferase | N824_07200 | Not Available | + | 5341907 - 5343448 | 56391.5 |
| mfs transporter | N824_07205 | Not Available | + | 5343479 - 5344636 | 41873.3 |
| hypothetical protein | N824_07210 | Not Available | + | 5344617 - 5345036 | 15878.1 |
| peptidase m42 | N824_07215 | Not Available | + | 5345088 - 5346203 | 41523.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.