Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| apolipoprotein acyltransferase | N824_06970 | Not Available | - | 5294059 - 5294934 | 32920.0 |
| ribonucleoside-diphosphate reductase | N824_06975 | Not Available | - | 5295508 - 5297910 | 90252.6 |
| hypothetical protein | N824_06980 | Not Available | - | 5299350 - 5299757 | 14758.5 |
| methionine sulfoxide reductase b | N824_06985 | Not Available | - | 5299894 - 5300373 | 17857.6 |
| succinyl-coa synthetase subsunit alpha | N824_06990 | Not Available | - | 5300510 - 5301382 | 29797.3 |
| hypothetical protein | N824_06995 | Not Available | - | 5301450 - 5302022 | 21632.1 |
| hypothetical protein | N824_07000 | Not Available | + | 5302119 - 5302550 | 16756.1 |
| hypothetical protein | N824_07005 | Not Available | - | 5302557 - 5303381 | 30665.6 |
| c4-dicarboxylate abc transporter | N824_07010 | Not Available | - | 5303426 - 5304700 | 46037.0 |
| hypothetical protein | N824_07015 | Not Available | + | 5304746 - 5305012 | 10377.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.