Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | N824_06920 | Not Available | + | 5283664 - 5284755 | 39653.3 |
| aquaporin z | N824_06925 | Not Available | + | 5284901 - 5285599 | 23673.2 |
| enolase | N824_06930 | Not Available | + | 5285768 - 5287063 | 46444.2 |
| hypothetical protein | N824_06935 | Not Available | - | 5287146 - 5288132 | 36554.6 |
| septum formation initiator | N824_06940 | Not Available | + | 5288303 - 5288602 | 11940.4 |
| membrane protein | N824_06945 | Not Available | - | 5288599 - 5289210 | 22301.3 |
| hypothetical protein | N824_06950 | Not Available | - | 5289221 - 5291305 | 78189.9 |
| hypothetical protein | N824_06955 | Not Available | + | 5291389 - 5292123 | 28490.4 |
| 3-oxoacyl-acp synthase | N824_06960 | Not Available | - | 5292189 - 5292932 | 26352.7 |
| agmatine deiminase | N824_06965 | Not Available | - | 5292985 - 5294049 | 39868.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.