Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | N824_06870 | Not Available | - | 5275099 - 5275509 | 14970.9 |
| methylated-dna--protein-cysteine methyltransferase | N824_06875 | Not Available | + | 5275677 - 5276525 | 31656.0 |
| hypothetical protein | N824_06880 | Not Available | - | 5276533 - 5277435 | 34792.9 |
| glycoside hydrolase | N824_06885 | Not Available | - | 5277515 - 5279176 | 60029.3 |
| hypothetical protein | N824_06890 | Not Available | + | 5279362 - 5279853 | 18226.4 |
| ribosomal large subunit pseudouridine synthase d | N824_06895 | Not Available | - | 5279855 - 5280541 | 25904.4 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | N824_06900 | Not Available | - | 5280541 - 5281356 | 29255.5 |
| hypothetical protein | N824_06905 | Not Available | + | 5281566 - 5281685 | 4436.33 |
| carbamoyl phosphate synthase small subunit | N824_06910 | Not Available | + | 5281678 - 5282790 | 40977.8 |
| abc transporter atp-binding protein | N824_06915 | Not Available | + | 5282885 - 5283655 | 28812.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.