Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| phosphoribosylglycinamide formyltransferase | N824_06620 | Not Available | + | 5226191 - 5226769 | 22115.7 |
| imp cyclohydrolase | N824_06625 | Not Available | + | 5226843 - 5228369 | 55766.6 |
| cell shape-determining protein mreb | N824_06630 | Not Available | + | 5228458 - 5229480 | 36814.1 |
| rod shape-determining protein mrec | N824_06635 | Not Available | + | 5229524 - 5230363 | 31193.4 |
| hypothetical protein | N824_06640 | Not Available | + | 5230446 - 5230868 | 16084.2 |
| penicillin-binding protein 2 | N824_06645 | Not Available | + | 5230868 - 5232811 | 72404.6 |
| rod shape-determining protein roda | N824_06650 | Not Available | + | 5232804 - 5234072 | 46849.9 |
| hypothetical protein | N824_06655 | Not Available | - | 5234069 - 5235115 | 39801.6 |
| thymidine kinase | N824_06660 | Not Available | + | 5235283 - 5235804 | 19249.3 |
| hypothetical protein | N824_06665 | Not Available | - | 5235827 - 5235946 | 4704.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.