Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| elongation factor tu | N824_06420 | Not Available | - | 5197661 - 5198848 | 43013.9 |
| Trna-thr | Not Available | Not Available | + | 5198970 - 5199044 | Not Available |
| Trna-gly | Not Available | Not Available | + | 5199127 - 5199202 | Not Available |
| Trna-tyr | Not Available | Not Available | + | 5199210 - 5199295 | Not Available |
| Trna-thr | Not Available | Not Available | + | 5199304 - 5199376 | Not Available |
| ribosome hibernation protein yhbh | N824_06445 | Not Available | - | 5199586 - 5199933 | 13242.9 |
| integrase | N824_06450 | Not Available | - | 5199950 - 5200834 | 34021.1 |
| 30s ribosomal protein s21 | N824_06455 | Not Available | - | 5200963 - 5201157 | 7549.43 |
| hypothetical protein | N824_06460 | Not Available | + | 5201314 - 5201685 | 14269.5 |
| hypothetical protein | N824_06465 | Not Available | - | 5201788 - 5202246 | 15722.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.