Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| trna delta(2)-isopentenylpyrophosphate transferase | N824_06370 | Not Available | + | 5184856 - 5185764 | 34116.9 |
| hypothetical protein | N824_06375 | Not Available | - | 5185761 - 5186075 | 11664.0 |
| dna-directed rna polymerase subunit beta | N824_06380 | Not Available | - | 5190548 - 5194351 | 142153.0 |
| hypothetical protein | N824_06385 | Not Available | - | 5194506 - 5194886 | 9860.78 |
| 50s ribosomal protein l10 | N824_06390 | Not Available | - | 5194949 - 5195470 | 18751.7 |
| 50s ribosomal protein l1 | N824_06395 | Not Available | - | 5195473 - 5196171 | 24491.8 |
| 50s ribosomal protein l11 | N824_06400 | Not Available | - | 5196195 - 5196638 | 15579.9 |
| transcription antitermination protein nusg | N824_06405 | Not Available | - | 5196710 - 5197252 | 20664.3 |
| elongation factor tu | N824_06410 | Not Available | - | 5197262 - 5197459 | 7293.91 |
| Trna-trp | Not Available | Not Available | + | 5197470 - 5197543 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.