Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| outer membrane chaperone skp | N824_06320 | Not Available | + | 5177563 - 5178159 | 21838.8 |
| guanine deaminase | N824_06325 | Not Available | + | 5178225 - 5178707 | 17998.9 |
| hypothetical protein | N824_06330 | Not Available | + | 5178784 - 5179332 | 19949.7 |
| hypothetical protein | N824_06335 | Not Available | + | 5179310 - 5179510 | 7549.2 |
| ribosome-associated heat shock protein | N824_06340 | Not Available | - | 5179511 - 5179912 | 15228.6 |
| 2,3,4,5-tetrahydropyridine-2,6-carboxylate n-succinyltransferase | N824_06345 | Not Available | + | 5180042 - 5180860 | 29604.1 |
| hypothetical protein | N824_06350 | Not Available | - | 5180877 - 5182037 | 43692.2 |
| translation factor sua5 | N824_06355 | Not Available | + | 5182137 - 5182703 | 20927.0 |
| trna nucleotidyltransferase | N824_06360 | Not Available | + | 5182730 - 5184136 | 53106.7 |
| hypothetical protein | N824_06365 | Not Available | + | 5184194 - 5184847 | 25191.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.