Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | N824_06270 | Not Available | + | 5165591 - 5166037 | 17864.7 |
| aminotransferase class iii | N824_06275 | Not Available | + | 5166073 - 5167266 | 43374.7 |
| hypothetical protein | N824_06280 | Not Available | - | 5167263 - 5168183 | 35476.6 |
| thioredoxin | N824_06285 | Not Available | - | 5168248 - 5168607 | 13303.3 |
| hypothetical protein | N824_06290 | Not Available | - | 5168719 - 5169642 | 32617.9 |
| hypothetical protein | N824_06295 | Not Available | - | 5169566 - 5173153 | 131676.0 |
| hypothetical protein | N824_06300 | Not Available | - | 5173248 - 5173730 | 18420.9 |
| malate dehydrogenase | N824_06305 | Not Available | + | 5173879 - 5174817 | 33127.3 |
| hypothetical protein | N824_06310 | Not Available | + | 5174842 - 5175264 | 15723.3 |
| dna-cytosine methyltransferase | N824_06315 | Not Available | - | 5175390 - 5177444 | 76048.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.