Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase | N824_06220 | Not Available | + | 5155087 - 5155698 | 23180.1 |
| peptidase m23 | N824_06225 | Not Available | + | 5155749 - 5157425 | 62373.9 |
| thiol peroxidase | N824_06230 | Not Available | + | 5157430 - 5157888 | 16925.2 |
| hypothetical protein | N824_06235 | Not Available | - | 5157880 - 5160063 | 80977.2 |
| hypothetical protein | N824_06240 | Not Available | - | 5160047 - 5160178 | 5289.55 |
| major facilitator transporter | N824_06245 | Not Available | - | 5160156 - 5161433 | 46100.7 |
| hypothetical protein | N824_06250 | Not Available | - | 5161688 - 5162569 | 33686.6 |
| abc transporter atp-binding protein | N824_06255 | Not Available | - | 5162529 - 5164367 | 69929.7 |
| rna polymerase sigma70 factor | N824_06260 | Not Available | + | 5164451 - 5164999 | 19189.8 |
| hypothetical protein | N824_06265 | Not Available | + | 5165050 - 5165577 | 19706.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.