Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| short-chain dehydrogenase | N824_06170 | Not Available | - | 5144481 - 5145239 | 27725.6 |
| hypothetical protein | N824_06175 | Not Available | - | 5145291 - 5146022 | 27891.4 |
| ubiquinone/menaquinone biosynthesis methyltransferase | N824_06180 | Not Available | - | 5146019 - 5146750 | 27581.3 |
| gtp-binding protein ysxc | N824_06185 | Not Available | + | 5146803 - 5147432 | 23874.9 |
| hypothetical protein | N824_06190 | Not Available | - | 5147429 - 5147605 | 6540.81 |
| 4-hydroxybenzoate polyprenyltransferase | N824_06195 | Not Available | + | 5147604 - 5148308 | 26271.5 |
| oligoendopeptidase f | N824_06200 | Not Available | + | 5148311 - 5150026 | 66283.8 |
| amino acid permease | N824_06205 | Not Available | + | 5150082 - 5152037 | 71201.8 |
| potassium transporter kup | N824_06210 | Not Available | - | 5152310 - 5154262 | 72724.8 |
| hypothetical protein | N824_06215 | Not Available | + | 5154427 - 5154996 | 21321.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.