Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| amino acid permease | N824_06070 | Not Available | + | 5124034 - 5125731 | 61020.2 |
| membrane protein | N824_06075 | Not Available | + | 5125857 - 5126390 | 19188.5 |
| rna methyltransferase | N824_06080 | Not Available | - | 5126550 - 5127713 | 45212.1 |
| hypothetical protein | N824_06085 | Not Available | - | 5127710 - 5128942 | 46509.1 |
| gmp synthase | N824_06090 | Not Available | - | 5128899 - 5130428 | 56510.8 |
| deoxycytidylate deaminase | N824_06095 | Not Available | - | 5130437 - 5130886 | 16271.4 |
| hypothetical protein | N824_06100 | Not Available | - | 5130985 - 5132418 | 51470.8 |
| lysine transporter lyse | N824_06105 | Not Available | + | 5132586 - 5133212 | 23556.7 |
| amidophosphoribosyltransferase | N824_06110 | Not Available | - | 5133282 - 5135183 | 72154.3 |
| glutamate racemase | N824_06115 | Not Available | - | 5135259 - 5136098 | 31370.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.