Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dehydrogenase | N824_05665 | Not Available | - | 5021061 - 5022386 | 49045.0 |
| sulfatase-modifying factor protein | N824_05670 | Not Available | - | 5022429 - 5023397 | 36374.9 |
| atp-dependent clp protease clpc | N824_05675 | Not Available | - | 5023609 - 5026149 | 94680.5 |
| hypothetical protein | N824_05680 | Not Available | - | 5026516 - 5027670 | 42177.1 |
| hypothetical protein | N824_05685 | Not Available | + | 5027891 - 5028967 | 41019.2 |
| hypothetical protein | N824_05690 | Not Available | + | 5028958 - 5029725 | 29988.3 |
| hypothetical protein | N824_05695 | Not Available | - | 5029822 - 5030595 | 29119.9 |
| heme abc transporter atp-binding protein | N824_05700 | Not Available | + | 5030883 - 5032559 | 62786.8 |
| xylose isomerase | N824_05705 | Not Available | - | 5032603 - 5033523 | 34333.9 |
| hypothetical protein | N824_05710 | Not Available | - | 5033613 - 5034431 | 31050.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.