Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator | N824_05615 | Not Available | + | 5011947 - 5012327 | 14312.3 |
| hypothetical protein | N824_05620 | Not Available | + | 5012355 - 5013968 | 61406.4 |
| hypothetical protein | N824_05625 | Not Available | + | 5014101 - 5015354 | 45822.7 |
| hypothetical protein | N824_05630 | Not Available | + | 5015266 - 5015760 | 16556.2 |
| hypothetical protein | N824_05635 | Not Available | + | 5015842 - 5016165 | 10664.8 |
| hypothetical protein | N824_05640 | Not Available | + | 5016107 - 5016658 | 19046.8 |
| hypothetical protein | N824_05645 | Not Available | + | 5016676 - 5017911 | 47619.4 |
| radical sam protein | N824_05650 | Not Available | + | 5017984 - 5019057 | 40708.2 |
| xylose isomerase | N824_05655 | Not Available | - | 5019062 - 5020000 | 34918.6 |
| hypothetical protein | N824_05660 | Not Available | - | 5020039 - 5021046 | 36967.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.