Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | N824_05300 | Not Available | + | 4933268 - 4933852 | 22476.9 |
| hypothetical protein | N824_05305 | Not Available | + | 4933895 - 4935241 | 50964.3 |
| acriflavin resistance protein | N824_05310 | Not Available | + | 4935263 - 4936429 | 40921.9 |
| transporter | N824_05315 | Not Available | + | 4936685 - 4939624 | 105819.0 |
| hypothetical protein | N824_05320 | Not Available | + | 4939746 - 4941083 | 50221.8 |
| 4-amino-4-deoxychorismate lyase | N824_05325 | Not Available | - | 4941191 - 4942030 | 31810.5 |
| ribosomal large subunit pseudouridine synthase d | N824_05330 | Not Available | - | 4942031 - 4943062 | 39068.5 |
| hypothetical protein | N824_05335 | Not Available | + | 4943362 - 4944237 | 32499.4 |
| l-lysine aminotransferase | N824_05340 | Not Available | + | 4944322 - 4945716 | 52197.7 |
| hypothetical protein | N824_05345 | Not Available | + | 4945716 - 4946120 | 15354.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.