Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| alcohol dehydrogenase | N824_05000 | Not Available | - | 4860048 - 4861088 | 37466.1 |
| dna polymerase iii subunit delta | N824_05005 | Not Available | - | 4861216 - 4862241 | 39301.5 |
| restriction endonuclease, type i, ecori, r subunit/type iii | N824_05010 | Not Available | + | 4862367 - 4862828 | 18030.1 |
| membrane protein | N824_05015 | Not Available | - | 4862854 - 4864233 | 51020.2 |
| multidrug transporter acrb | N824_05020 | Not Available | - | 4864253 - 4867324 | 111210.0 |
| hypothetical protein | N824_05025 | Not Available | - | 4867394 - 4868470 | 39118.2 |
| transcriptional regulator | N824_05030 | Not Available | + | 4868755 - 4869357 | 21878.2 |
| valyl-trna synthetase | N824_05035 | Not Available | - | 4869402 - 4872068 | 102259.0 |
| peptidase s9 | N824_05040 | Not Available | - | 4872341 - 4874494 | 80830.2 |
| hypothetical protein | N824_05045 | Not Available | + | 4874691 - 4875539 | 31457.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.