Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | N824_19620 | Not Available | + | 1910705 - 1911328 | 23235.7 |
| luxr family transcriptional regulator | N824_19625 | Not Available | - | 1911331 - 1911963 | 23287.4 |
| hypothetical protein | N824_19630 | Not Available | - | 1911956 - 1914895 | 110679.0 |
| hypothetical protein | N824_19635 | Not Available | + | 1915049 - 1915903 | 32763.1 |
| hypothetical protein | N824_19640 | Not Available | + | 1915941 - 1916408 | 17511.5 |
| hypothetical protein | N824_19645 | Not Available | - | 1916548 - 1917147 | 23312.5 |
| rna polymerase subunit sigma-24 | N824_19650 | Not Available | - | 1917134 - 1917631 | 19531.3 |
| sodium:dicarboxylate symporter | N824_19655 | Not Available | + | 1917761 - 1919188 | 52048.5 |
| hypothetical protein | N824_19660 | Not Available | + | 1919276 - 1919704 | 16397.5 |
| 50s ribosomal protein l21 | N824_19665 | Not Available | + | 1919786 - 1920097 | 11381.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.