Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| anthranilate phosphoribosyltransferase | N824_18905 | Not Available | + | 1739972 - 1740961 | 36044.1 |
| hypothetical protein | N824_18910 | Not Available | + | 1740961 - 1741590 | 24027.7 |
| tryptophan synthase subunit beta | N824_18915 | Not Available | + | 1741623 - 1742804 | 43178.8 |
| hypothetical protein | N824_18920 | Not Available | + | 1742808 - 1743392 | 19325.5 |
| sodium:proton antiporter | N824_18930 | Not Available | - | 1743568 - 1744749 | 42134.9 |
| translation factor sua5 | N824_18935 | Not Available | - | 1744750 - 1745370 | 22210.6 |
| glutamate synthase | N824_18940 | Not Available | + | 1745447 - 1747111 | 60773.4 |
| asparaginyl-trna synthetase | N824_18945 | Not Available | - | 1747164 - 1748612 | 55507.2 |
| malate--coa ligase subunit beta | N824_18950 | Not Available | - | 1749200 - 1750390 | 42770.6 |
| hypothetical protein | N824_18955 | Not Available | - | 1750432 - 1751187 | 29556.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.