Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| Trna-gly | Not Available | Not Available | + | 1730834 - 1730909 | Not Available |
| recx family transcriptional regulator | N824_18860 | Not Available | - | 1731043 - 1731534 | 19086.4 |
| zinc transporter | N824_18865 | Not Available | + | 1731773 - 1732459 | 26222.5 |
| alanine racemase | N824_18870 | Not Available | + | 1732533 - 1734992 | 91041.8 |
| membrane protein | N824_18875 | Not Available | + | 1735012 - 1735602 | 21561.7 |
| hypothetical protein | N824_18880 | Not Available | + | 1735610 - 1735951 | 13049.9 |
| hypothetical protein | N824_18885 | Not Available | - | 1735960 - 1736667 | 26783.3 |
| sodium:solute symporter | N824_18890 | Not Available | - | 1736688 - 1738166 | 54966.4 |
| recombinase recr | N824_18895 | Not Available | + | 1738284 - 1738901 | 22871.8 |
| short-chain dehydrogenase | N824_18900 | Not Available | + | 1738907 - 1739722 | 29338.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.