Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter sp. V48 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sand; sand microcosms |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter sp. V48
Accession NumberAWRU00000000.1
Gene Summary
Adenine Count
1961672 bp
Thymine Count
1971998 bp
Guanine Count
1248287 bp
Cytosine Count
1255921 bp
Genome Length
6459990 bp
Protein-coding Genes
5839 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dihydroorotase | N824_18005 | Not Available | + | 1543307 - 1544569 | 45286.4 |
| hypothetical protein | N824_18010 | Not Available | + | 1544562 - 1545239 | 26258.7 |
| hypothetical protein | N824_18015 | Not Available | + | 1545292 - 1545837 | 20186.9 |
| aldo/keto reductase | N824_18020 | Not Available | + | 1546035 - 1547039 | 36860.4 |
| arac family transcriptional regulator | N824_18025 | Not Available | + | 1547123 - 1547935 | 31420.3 |
| hypothetical protein | N824_18030 | Not Available | - | 1548044 - 1548823 | 28565.0 |
| glycosyl transferase family 2 | N824_18035 | Not Available | + | 1549060 - 1550013 | 36248.1 |
| beta-lactamase regulatory protein | N824_18040 | Not Available | + | 1550017 - 1550985 | 37444.5 |
| hypothetical protein | N824_18045 | Not Available | + | 1550982 - 1551770 | 30145.0 |
| gh3 auxin-responsive promoter | N824_18050 | Not Available | + | 1551780 - 1553279 | 56001.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.